The Royal Canadian Mounted Police in Richmond, British Columbia, said on Twitter a suspect was taken into custody but operations at Vancouver International Airport were not affected.
RCMP Corporal Dennis Hwang said a male US citizen was in custody and police were "working towards laying charges".
"I would not classify it as a terror issue but certain security protocols came into play once we received the call," he said from Vancouver.
CNN reported that a "threatening message" was found on the aircraft. Hwang declined to give details.